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Using Active Directory Sites and Services, you can manually adjust the NTDS Links if you like. Prior to doing so, I would recommend examining why the AD has automatically configured the NTDS links this way. You will want to double-check the FSMO role locations and review the network/bandwidth between the various locations. If you would still like to perform the adjustments manually you should create the new links and then remove the old ones. I would suggest changing no more than two links every 24 hours and performing thorough reviews of the event logs of all servers involved during the changes.
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